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Btnl5 butyrophilin-like 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 686048, updated on 27-Nov-2024

Summary

Symbol
Btnl5provided by RGD
Full Name
butyrophilin-like 5provided by RGD
Primary source
RGD:1598537
See related
AllianceGenome:RGD:1598537
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 4.0), Spleen (RPKM 2.4) and 6 other tissues See more
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Genomic context

See Btnl5 in Genome Data Viewer
Location:
20p12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (4348162..4378309)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (4366780..4376385)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (2723576..2733181, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene butyrophilin-like 7 Neighboring gene butyrophilin-like 6, pseudogene 1 Neighboring gene butyrophilin, subfamily 3, member A2 Neighboring gene uncharacterized LOC134483778 Neighboring gene testis expressed basic protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in T cell receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of cytokine production IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
butyrophilin-like 5
Names
butyrophilin-like protein 1
butyrophilin-like protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166351.1NP_001159823.1  butyrophilin-like 5 isoform 2 precursor

    Status: PROVISIONAL

    Source sequence(s)
    BX883043
    UniProtKB/TrEMBL
    F1M8A0
    Conserved Domains (3) summary
    smart00410
    Location:78183
    IG_like; Immunoglobulin like
    cd13733
    Location:382538
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
    cl11960
    Location:84184
    Ig; Immunoglobulin domain
  2. NM_001430569.1NP_001417498.1  butyrophilin-like 5 isoform 1 precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000020

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    4348162..4378309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279509.1XP_063135579.1  butyrophilin-like 5 isoform X1

  2. XM_063279514.1XP_063135584.1  butyrophilin-like 5 isoform X4

  3. XM_063279516.1XP_063135586.1  butyrophilin-like 5 isoform X5

  4. XM_063279510.1XP_063135580.1  butyrophilin-like 5 isoform X1

  5. XM_063279515.1XP_063135585.1  butyrophilin-like 5 isoform X4

  6. XM_063279511.1XP_063135581.1  butyrophilin-like 5 isoform X1

  7. XM_063279512.1XP_063135582.1  butyrophilin-like 5 isoform X2

  8. XM_063279517.1XP_063135587.1  butyrophilin-like 5 isoform X5

  9. XM_063279513.1XP_063135583.1  butyrophilin-like 5 isoform X3