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Speer4cl1 spermatogenesis associated glutamate (E)-rich protein 4C like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685989, updated on 17-Aug-2024

Summary

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Official Symbol
Speer4cl1provided by RGD
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4C like 1provided by RGD
Primary source
RGD:1587786
See related
AllianceGenome:RGD:1587786
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Speer4cl
Expression
Biased expression in Testes (RPKM 255.5), Brain (RPKM 76.8) and 3 other tissues See more
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Genomic context

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See Speer4cl1 in Genome Data Viewer
Location:
19q11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (24811769..25016336)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (21909719..21937396, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (309214..313428, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II subunit GRINL1A-like Neighboring gene disks large homolog 5-like Neighboring gene uncharacterized LOC134483459 Neighboring gene uncharacterized LOC134483277 Neighboring gene zinc finger CCCH-type antiviral protein 1-like Neighboring gene uncharacterized LOC134483280 Neighboring gene uncharacterized LOC134483279 Neighboring gene DNA-directed RNA polymerase II subunit GRINL1A-like Neighboring gene disks large homolog 5-like Neighboring gene uncharacterized LOC134483462 Neighboring gene disks large homolog 5-like Neighboring gene U2 spliceosomal RNA Neighboring gene disks large homolog 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
disks large homolog 5-like; uncharacterized protein Speer4cl1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    24811769..25016336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063278573.1 → XP_063134643.1  uncharacterized protein Speer4cl1 isoform X3

  2. XM_063278571.1 → XP_063134641.1  disks large homolog 5-like isoform X1

  3. XM_063278572.1 → XP_063134642.1  disks large homolog 5-like isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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