U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pilrbl1 paired immunoglobin-like type 2 receptor beta like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685157, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
Pilrbl1provided by RGD
Official Full Name
paired immunoglobin-like type 2 receptor beta like 1provided by RGD
Primary source
RGD:1597726
See related
EnsemblRapid:ENSRNOG00000072174 AllianceGenome:RGD:1597726
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565960
Summary
Predicted to enable MHC class I protein binding activity. Predicted to be located in cell periphery and membrane. Orthologous to human PILRA (paired immunoglobin like type 2 receptor alpha). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Spleen (RPKM 69.5), Thymus (RPKM 8.7) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Pilrbl1 in Genome Data Viewer
Location:
12q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (24429646..24436253, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (18792840..18799391, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (20270897..20276883, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095853 Neighboring gene paired immunoglobin-like type 2 receptor beta, pseudogene 2 Neighboring gene paired immunoglobin-like type 2 receptor beta, pseudogene 3 Neighboring gene paired immunoglobin-like type 2 receptor beta 1 like 2 Neighboring gene ras-related protein Rap-1b pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables MHC class I protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
similar to paired immunoglobin-like type 2 receptor beta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001394392.1 → NP_001381321.1  similar to paired immunoglobin-like type 2 receptor beta precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    A0A8I5ZVN8
    Conserved Domains (2) summary
    cd00096
    Location:41 → 45
    Ig; Ig strand A [structural motif]
    cl11960
    Location:41 → 135
    Ig; Immunoglobulin domain

RNA

  1. NR_172124.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    Related
    ENSRNOT00000165229.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    24429646..24436253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039089745.2 → XP_038945673.1  similar to paired immunoglobin-like type 2 receptor beta isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZVN8, A0A8I6GL43
    Conserved Domains (2) summary
    cd00096
    Location:26 → 30
    Ig; Ig strand A [structural motif]
    cl11960
    Location:26 → 120
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials