Zfp318 zinc finger protein 318 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Zfp318provided by RGD
Official Full Name: zinc finger protein 318provided by RGD
Primary source: RGD:1583221
See related: EnsemblRapid:ENSRNOG00000018741 AllianceGenome:RGD:1583221
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in negative regulation of DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZNF318 (zinc finger protein 318). [provided by Alliance of Genome Resources, Jan 2025]
Expression: Biased expression in Lung (RPKM 91.0), Spleen (RPKM 76.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 9q12

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (22060899..22100174, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (14562958..14601557, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (16947818..16979131, complement)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH129717 (e-PCR)
- UniSTS:213012

RH132550 (e-PCR)
- UniSTS:215833

RH144000 (e-PCR)
- UniSTS:233246

RH132300 (e-PCR)
- UniSTS:215583

RH133362 (e-PCR)
- UniSTS:216645

RH141056 (e-PCR)
- UniSTS:223056

RH128497 (e-PCR)
- UniSTS:211805

RH141872 (e-PCR)
- UniSTS:223864

RH138719 (e-PCR)
- UniSTS:220806

RH127795 (e-PCR)
- UniSTS:211105

RH124891 (e-PCR)
- UniSTS:161713

RH135276 (e-PCR)
- UniSTS:218553

BM383830 (e-PCR)
- UniSTS:261061

RH127839 (e-PCR)
- UniSTS:211149

RH137531 (e-PCR)
- UniSTS:219619

UniSTS:143850 (e-PCR)
- UniSTS:143850

Mea1 (e-PCR), detects polymorphism
- UniSTS:143850

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables protein heterodimerization activity	ISO Inferred from Sequence Orthology more info
enables protein homodimerization activity	ISO Inferred from Sequence Orthology more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in negative regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative regulation of DNA-templated transcription	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of DNA-templated transcription	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in cytosol	ISO Inferred from Sequence Orthology more info
is_active_in nucleoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: zinc finger protein 318

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.