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Fam25a family with sequence similarity 25, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 684972, updated on 9-Dec-2024

Summary

Official Symbol
Fam25aprovided by RGD
Official Full Name
family with sequence similarity 25, member Aprovided by RGD
Primary source
RGD:1584388
See related
EnsemblRapid:ENSRNOG00000055025 AllianceGenome:RGD:1584388
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to several human genes including FAM25A (family with sequence similarity 25 member A). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Lung (RPKM 84.6), Kidney (RPKM 19.6) and 4 other tissues See more
Orthologs
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Genomic context

See Fam25a in Genome Data Viewer
Location:
16p15
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (9686922..9690728, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (9680668..9684474, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (10702264..10706073, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene shieldin complex subunit 2 Neighboring gene small nucleolar RNA SNORA15 Neighboring gene glutamate dehydrogenase 1 Neighboring gene synuclein, gamma Neighboring gene multimerin 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134849.1NP_001128321.1  protein FAM25A

    See identical proteins and their annotated locations for NP_001128321.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    UniProtKB/TrEMBL
    A0A0G2K0T8, A6KFS3
    Related
    ENSRNOP00000071578.1, ENSRNOT00000089114.3
    Conserved Domains (1) summary
    pfam15825
    Location:2488
    FAM25; FAM25 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    9686922..9690728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)