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Or52i2 olfactory receptor family 52 subfamily I member 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 684179, updated on 9-Dec-2024

Summary

Official Symbol
Or52i2provided by RGD
Official Full Name
olfactory receptor family 52 subfamily I member 2provided by RGD
Primary source
RGD:1593877
See related
EnsemblRapid:ENSRNOG00000047148 AllianceGenome:RGD:1593877
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be active in plasma membrane. Orthologous to several human genes including OR52I1 (olfactory receptor family 52 subfamily I member 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Or52i2 in Genome Data Viewer
Location:
1q32
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (166517118..166518080)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (157105171..157106151)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (167826336..167827598)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 52 subfamily M member 1 Neighboring gene olfactory receptor family 51 subfamily H member 1 Neighboring gene olfactory receptor family 52 subfamily I member 2 like, pseudogene 1 Neighboring gene tripartite motif containing 68

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
olfactory receptor 52I2
Names
olfactory receptor family 52 subfamily J member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    166517118..166518080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097783.2XP_038953711.1  olfactory receptor 52I2

    UniProtKB/TrEMBL
    A6I756, M0RAM8
    Related
    ENSRNOP00000066580.3, ENSRNOT00000073158.4
    Conserved Domains (2) summary
    cd14964
    Location:3056
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:29303
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily