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Prr19 proline rich 19 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681408, updated on 9-Dec-2024

Summary

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Official Symbol
Prr19provided by RGD
Official Full Name
proline rich 19provided by RGD
Primary source
RGD:1595416
See related
EnsemblRapid:ENSRNOG00000043154 AllianceGenome:RGD:1595416
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in chromosome and nucleus. Orthologous to human PRR19 (proline rich 19). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward (RPKM 53.2) See more
Orthologs
human mouse all
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Genomic context

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See Prr19 in Genome Data Viewer
Location:
1q21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (90012307..90017988)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (80884529..80890712)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (82167027..82172636)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene capicua transcriptional repressor Neighboring gene platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 Neighboring gene uncharacterized LOC134482973 Neighboring gene transmembrane protein 145 Neighboring gene multiple EGF-like-domains 8 Neighboring gene cornifelin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC188639

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in chromosome ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
proline-rich protein 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173428.2 → NP_001166899.1  proline-rich protein 19

    See identical proteins and their annotated locations for NP_001166899.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    D3ZED7
    Related
    ENSRNOP00000072020.2, ENSRNOT00000088955.3
    Conserved Domains (1) summary
    pfam15455
    Location:1 → 364
    Pro-rich_19; Proline-rich 19

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    90012307..90017988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063273759.1 → XP_063129829.1  proline-rich protein 19 isoform X3

    Related
    ENSRNOP00000062750.2, ENSRNOT00000068251.4

  2. XM_006228480.5 → XP_006228542.1  proline-rich protein 19 isoform X4

    Conserved Domains (1) summary
    pfam15455
    Location:1 → 363
    Pro-rich_19; Proline-rich 19

  3. XM_039090657.2 → XP_038946585.1  proline-rich protein 19 isoform X2

    Conserved Domains (1) summary
    pfam15455
    Location:13 → 375
    Pro-rich_19; Proline-rich 19

  4. XM_039090655.2 → XP_038946583.1  proline-rich protein 19 isoform X1

    Conserved Domains (1) summary
    pfam15455
    Location:13 → 376
    Pro-rich_19; Proline-rich 19
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
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