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Tigd2 tigger transposable element derived 2 [ Mus musculus (house mouse) ]

Gene ID: 68140, updated on 27-Nov-2024

Summary

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Official Symbol
Tigd2provided by MGI
Official Full Name
tigger transposable element derived 2provided by MGI
Primary source
MGI:MGI:1915390
See related
Ensembl:ENSMUSG00000049232 AllianceGenome:MGI:1915390
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3632410O17Rik
Summary
Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human TIGD2 (tigger transposable element derived 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in adrenal adult (RPKM 3.7), bladder adult (RPKM 2.3) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Tigd2 in Genome Data Viewer
Location:
6 B3; 6 28.29 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (59185855..59189018)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (59208870..59212033)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene TPX2, microtubule-associated protein homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_16030 Neighboring gene predicted gene, 22367 Neighboring gene STARR-seq mESC enhancer starr_16031 Neighboring gene STARR-positive B cell enhancer ABC_E4830 Neighboring gene STARR-positive B cell enhancer ABC_E8106 Neighboring gene STARR-seq mESC enhancer starr_16032 Neighboring gene STARR-seq mESC enhancer starr_16034 Neighboring gene STARR-seq mESC enhancer starr_16035 Neighboring gene STARR-seq mESC enhancer starr_16038 Neighboring gene STARR-seq mESC enhancer starr_16039 Neighboring gene GPRIN family member 3 Neighboring gene STARR-seq mESC enhancer starr_16041 Neighboring gene STARR-seq mESC enhancer starr_16042 Neighboring gene STARR-seq mESC enhancer starr_16043 Neighboring gene predicted gene, 35195 Neighboring gene predicted gene, 22622

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tigger transposable element-derived protein 2
Names
tigger transposable element derived 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081145.1 → NP_001074614.1  tigger transposable element-derived protein 2

    See identical proteins and their annotated locations for NP_001074614.1

    Status: PROVISIONAL

    Source sequence(s)
    AC124704
    Consensus CDS
    CCDS39500.1
    UniProtKB/Swiss-Prot
    Q0VBL1, Q505P7, Q6NV77
    Related
    ENSMUSP00000057223.4, ENSMUST00000062626.4
    Conserved Domains (3) summary
    pfam03184
    Location:207 → 385
    DDE_1; DDE superfamily endonuclease
    pfam03221
    Location:76 → 135
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:4 → 52
    HTH; Helix-turn-helix domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    59185855..59189018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0VBL1.1 GenPept UniProtKB/Swiss-Prot:Q0VBL1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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