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Zfp862 zinc finger protein 862 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681217, updated on 9-Dec-2024

Summary

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Symbol
Zfp862provided by RGD
Full Name
zinc finger protein 862provided by RGD
Primary source
RGD:1598054
See related
EnsemblRapid:ENSRNOG00000091106 AllianceGenome:RGD:1598054
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable protein dimerization activity. Predicted to be involved in regulation of DNA-templated transcription. Orthologous to human ZNF862 (zinc finger protein 862). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Uterus (RPKM 19.4), Lung (RPKM 15.6) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Zfp862 in Genome Data Viewer
Location:
4q24
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (78783833..78812884)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (77452930..77481981)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78136183..78165230)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 467 Neighboring gene SCO-spondin Neighboring gene uncharacterized LOC120102263 Neighboring gene ATPase, H+ transporting V0 subunit e2 Neighboring gene leucine rich repeat containing 61 Neighboring gene retinoic acid receptor responder 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 862

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    78783833..78812884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017592988.2 → XP_017448477.1  zinc finger protein 862 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AM86

  2. XM_017592985.2 → XP_017448474.1  zinc finger protein 862 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AM86
    Related
    ENSRNOP00000109341.1, ENSRNOT00000135251.1

  3. XM_039108663.1 → XP_038964591.1  zinc finger protein 862 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AM86
    Conserved Domains (4) summary
    smart00349
    Location:292 → 352
    KRAB; krueppel associated box
    smart00597
    Location:94 → 176
    ZnF_TTF; zinc finger in transposases and transcription factors
    pfam05699
    Location:980 → 1027
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    cl02581
    Location:11 → 35
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  4. XM_017592987.2 → XP_017448476.1  zinc finger protein 862 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AM86

  5. XM_017592990.3 → XP_017448479.1  zinc finger protein 862 isoform X6

    UniProtKB/TrEMBL
    A0A8I6AM86
    Conserved Domains (3) summary
    smart00349
    Location:240 → 300
    KRAB; krueppel associated box
    smart00597
    Location:42 → 124
    ZnF_TTF; zinc finger in transposases and transcription factors
    pfam05699
    Location:928 → 975
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  6. XM_039108665.2 → XP_038964593.1  zinc finger protein 862 isoform X6

    UniProtKB/TrEMBL
    A0A8I6AM86
    Conserved Domains (3) summary
    smart00349
    Location:240 → 300
    KRAB; krueppel associated box
    smart00597
    Location:42 → 124
    ZnF_TTF; zinc finger in transposases and transcription factors
    pfam05699
    Location:928 → 975
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  7. XM_063286959.1 → XP_063143029.1  zinc finger protein 862 isoform X7

  8. XM_017592989.3 → XP_017448478.1  zinc finger protein 862 isoform X5

    UniProtKB/TrEMBL
    A0A8I6AM86

  9. XM_039108669.1 → XP_038964597.1  zinc finger protein 862 isoform X8

    Conserved Domains (2) summary
    smart00597
    Location:52 → 135
    ZnF_TTF; zinc finger in transposases and transcription factors
    pfam05699
    Location:610 → 657
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  10. XM_039108667.1 → XP_038964595.1  zinc finger protein 862 isoform X8

    Conserved Domains (2) summary
    smart00597
    Location:52 → 135
    ZnF_TTF; zinc finger in transposases and transcription factors
    pfam05699
    Location:610 → 657
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  11. XM_039108670.1 → XP_038964598.1  zinc finger protein 862 isoform X8

    Conserved Domains (2) summary
    smart00597
    Location:52 → 135
    ZnF_TTF; zinc finger in transposases and transcription factors
    pfam05699
    Location:610 → 657
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  12. XM_039108668.1 → XP_038964596.1  zinc finger protein 862 isoform X8

    Conserved Domains (2) summary
    smart00597
    Location:52 → 135
    ZnF_TTF; zinc finger in transposases and transcription factors
    pfam05699
    Location:610 → 657
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

RNA

  1. XR_005503550.1 RNA Sequence

  2. XR_005503549.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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