U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Samt3 spermatogenesis associated multipass transmembrane protein 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681167, updated on 27-Nov-2024

Summary

Official Symbol
Samt3provided by RGD
Official Full Name
spermatogenesis associated multipass transmembrane protein 3provided by RGD
Primary source
RGD:1583524
See related
EnsemblRapid:ENSRNOG00000029010 AllianceGenome:RGD:1583524
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be active in bicellular tight junction and plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 74.8) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Samt3 in Genome Data Viewer
Location:
Xq21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (54522644..54525478)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (50571864..50574698)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (54553870..54556708)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene TLR adaptor interacting with endolysosomal SLC15A4 Neighboring gene actin, gamma 1 like 2 Neighboring gene nuclear receptor subfamily 0, group B, member 1 Neighboring gene MAGE family member B2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in bicellular tight junction IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
spermatogenesis associated multipass transmembrane protein 3

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408874.1NP_001395803.1  spermatogenesis associated multipass transmembrane protein 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021
    UniProtKB/TrEMBL
    F1M0F7
    Related
    ENSRNOP00000049315.3, ENSRNOT00000040231.6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    54522644..54525478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)