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Prelid2 PRELI domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681037, updated on 27-Nov-2024

Summary

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Official Symbol
Prelid2provided by RGD
Official Full Name
PRELI domain containing 2provided by RGD
Primary source
RGD:1584707
See related
EnsemblRapid:ENSRNOG00000067168 AllianceGenome:RGD:1584707
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in mitochondrial intermembrane space. Orthologous to human PRELID2 (PRELI domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 65.0), Heart (RPKM 21.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Prelid2 in Genome Data Viewer
Location:
18p11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (34120989..34212699, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (33869934..33961320, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (36198522..36286217, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene transketolase, pseudogene 1 Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene cyclin-dependent kinase 1 pseudogene Neighboring gene glutaredoxin and cysteine rich domain containing 2 Neighboring gene chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables phosphatidic acid transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in phospholipid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial intermembrane space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PRELI domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271333.1 → NP_001258262.1  PRELI domain-containing protein 2

    See identical proteins and their annotated locations for NP_001258262.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000018
    UniProtKB/TrEMBL
    A0A8I6A2K3, A6J3J3
    Related
    ENSRNOP00000084747.2, ENSRNOT00000096234.2
    Conserved Domains (1) summary
    pfam04707
    Location:16 → 173
    PRELI; PRELI-like family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    34120989..34212699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063277588.1 → XP_063133658.1  PRELI domain-containing protein 2 isoform X4

  2. XM_039097122.1 → XP_038953050.1  PRELI domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    pfam04707
    Location:31 → 129
    PRELI; PRELI-like family

  3. XM_008772173.3 → XP_008770395.2  PRELI domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AP10
    Conserved Domains (1) summary
    pfam04707
    Location:1 → 144
    PRELI; PRELI-like family

  4. XM_039097123.2 → XP_038953051.1  PRELI domain-containing protein 2 isoform X3

    Conserved Domains (1) summary
    pfam04707
    Location:16 → 123
    PRELI; PRELI-like family

RNA

  1. XR_010059597.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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