Mrpl20 mitochondrial ribosomal protein L20 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Mrpl20provided by RGD
Official Full Name: mitochondrial ribosomal protein L20provided by RGD
Primary source: RGD:1588219
See related: EnsemblRapid:ENSRNOG00000018647 AllianceGenome:RGD:1588219
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrial ribosome. Orthologous to human MRPL20 (mitochondrial ribosomal protein L20). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Heart (RPKM 350.6), Thymus (RPKM 285.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 5q36

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (171690664..171695728)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (166408962..166413492)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (173248245..173252775)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH133343 (e-PCR)
- UniSTS:216626

RH135074 (e-PCR)
- UniSTS:218351

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables rRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of mitochondrial large ribosomal subunit	ISO Inferred from Sequence Orthology more info
located_in mitochondrial ribosome	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: large ribosomal subunit protein bL20m

Names: 39S ribosomal protein L20, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109428.1 → NP_001102898.1 large ribosomal subunit protein bL20m

Status: PROVISIONAL

Source sequence(s)

CH473968

UniProtKB/TrEMBL

A6IUS6, B2GV62, F7ELM1

Related

ENSRNOP00000025213.4, ENSRNOT00000025213.7

Conserved Domains (1) summary

pfam00453
Location:15 → 113

Ribosomal_L20; Ribosomal protein L20