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Smtnl2 smoothelin-like 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 679629, updated on 27-Nov-2024

Summary

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Official Symbol
Smtnl2provided by RGD
Official Full Name
smoothelin-like 2provided by RGD
Primary source
RGD:1585960
See related
EnsemblRapid:ENSRNOG00000015157 AllianceGenome:RGD:1585960
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in actin cytoskeleton organization. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center. Orthologous to human SMTNL2 (smoothelin like 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 656.3), Kidney (RPKM 173.5) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Smtnl2 in Genome Data Viewer
Location:
10q24
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (57506873..57528050, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (57008322..57029505, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (58951845..58973020, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase drkD-like Neighboring gene XIAP associated factor 1 Neighboring gene F-box protein 39 Neighboring gene tektin 1 Neighboring gene uncharacterized LOC134480820 Neighboring gene MYB binding protein 1a Neighboring gene gamma-glutamyl transferase 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
smoothelin-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190998.1 → NP_001177927.1  smoothelin-like protein 2

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    D3ZUC1
    Related
    ENSRNOP00000020379.3, ENSRNOT00000020379.7
    Conserved Domains (2) summary
    PRK09039
    Location:8 → 84
    PRK09039; peptidoglycan -binding protein
    cd21261
    Location:347 → 453
    CH_SMTNL2; calponin homology (CH) domain found in smoothelin-like protein 2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    57506873..57528050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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