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Ccdc70 coiled-coil domain containing 70 [ Mus musculus (house mouse) ]

Gene ID: 67929, updated on 27-Nov-2024

Summary

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Official Symbol
Ccdc70provided by MGI
Official Full Name
coiled-coil domain containing 70provided by MGI
Primary source
MGI:MGI:1915179
See related
Ensembl:ENSMUSG00000017049 AllianceGenome:MGI:1915179
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700112P19Rik
Summary
Predicted to be located in plasma membrane. Orthologous to human CCDC70 (coiled-coil domain containing 70). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 22.2) See more
Orthologs
human all
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Genomic context

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See Ccdc70 in Genome Data Viewer
Location:
8 A2; 8 10.73 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22459791..22464071)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21969775..21974055)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_20895 Neighboring gene predicted gene, 29821 Neighboring gene defensin beta 13 Neighboring gene family with sequence similarity 90, member A1A Neighboring gene STARR-seq mESC enhancer starr_20896 Neighboring gene ATPase, copper transporting, beta polypeptide Neighboring gene STARR-positive B cell enhancer ABC_E2858 Neighboring gene STARR-seq mESC enhancer starr_20897 Neighboring gene ALG11 alpha-1,2-mannosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 70

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357224.1 → NP_001344153.1  coiled-coil domain-containing protein 70

    Status: VALIDATED

    Source sequence(s)
    AK007190, BB017038
    Consensus CDS
    CCDS22167.1
    UniProtKB/Swiss-Prot
    Q9D9B0, Q9D9H6
    Related
    ENSMUSP00000069249.2, ENSMUST00000070649.2

  2. NM_026459.4 → NP_080735.1  coiled-coil domain-containing protein 70

    See identical proteins and their annotated locations for NP_080735.1

    Status: VALIDATED

    Source sequence(s)
    AL590619
    Consensus CDS
    CCDS22167.1
    UniProtKB/Swiss-Prot
    Q9D9B0, Q9D9H6
    Related
    ENSMUSP00000017193.2, ENSMUST00000017193.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    22459791..22464071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509182.1 → XP_006509245.1  coiled-coil domain-containing protein 70 isoform X1

    See identical proteins and their annotated locations for XP_006509245.1

    UniProtKB/Swiss-Prot
    Q9D9B0, Q9D9H6
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9B0.1 GenPept UniProtKB/Swiss-Prot:Q9D9B0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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