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zgc:136439 zgc:136439 [ Danio rerio (zebrafish) ]

Gene ID: 678627, updated on 9-Dec-2024

Summary

Official Symbol
zgc:136439provided by ZNC
Official Full Name
zgc:136439provided by ZNC
Primary source
ZFIN:ZDB-GENE-060421-2858
See related
Ensembl:ENSDARG00000009267 AllianceGenome:ZFIN:ZDB-GENE-060421-2858
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:123083; si:dz211o13.10; si:busm1-211o13.10
Summary
Predicted to act upstream of or within biosynthetic process. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See zgc:136439 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (41080092..41083181)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (41278305..41281394)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene adenosine deaminase tRNA specific 3 Neighboring gene O-sialoglycoprotein endopeptidase-like 1 Neighboring gene ankyrin and armadillo repeat containing Neighboring gene U5 spliceosomal RNA Neighboring gene asparagine synthetase domain containing 1 Neighboring gene ASNSD1 upstream open reading frame Neighboring gene solute carrier family 40 member 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC678627
Names
thymidylyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040372.1NP_001035462.1  uncharacterized protein LOC678627

    See identical proteins and their annotated locations for NP_001035462.1

    Status: PREDICTED

    Source sequence(s)
    BC115133
    UniProtKB/TrEMBL
    A0A8M1N8W0, Q1RM52
    Related
    ENSDARP00000019928.4, ENSDART00000019289.6
    Conserved Domains (2) summary
    COG1208
    Location:1269
    GCD1; NDP-sugar pyrophosphorylase, includes eIF-2Bgamma, eIF-2Bepsilon, and LPS biosynthesis proteins [Translation, ribosomal structure and biogenesis, Cell wall/membrane/envelope biogenesis]
    cl11394
    Location:3250
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    41080092..41083181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)