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pmp22b peripheral myelin protein 22b [ Danio rerio (zebrafish) ]

Gene ID: 678607, updated on 4-Jan-2025

Summary

Official Symbol
pmp22bprovided by ZNC
Official Full Name
peripheral myelin protein 22bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060421-4337
See related
Ensembl:ENSDARG00000060457 AllianceGenome:ZFIN:ZDB-GENE-060421-4337
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
id:ibd2630; wu:fb81f09; zgc:136919
Summary
Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in notochord; otic placode; otic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies. Orthologous to human PMP22 (peripheral myelin protein 22). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See pmp22b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (37275333..37299671, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (37100591..37124929, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1b Neighboring gene uncharacterized LOC108191741 Neighboring gene uncharacterized LOC137496774 Neighboring gene tektin 3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC136919

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
peripheral myelin protein 22b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040355.2NP_001035445.1  peripheral myelin protein 22b

    See identical proteins and their annotated locations for NP_001035445.1

    Status: VALIDATED

    Source sequence(s)
    BC154259, CR293521
    UniProtKB/TrEMBL
    A8KBV6, Q1RLQ8
    Related
    ENSDARP00000079636.4, ENSDART00000085201.5
    Conserved Domains (1) summary
    cl21598
    Location:1148
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    37275333..37299671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)