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ccdc93 coiled-coil domain containing 93 [ Danio rerio (zebrafish) ]

Gene ID: 678566, updated on 9-Dec-2024

Summary

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Official Symbol
ccdc93provided by ZNC
Official Full Name
coiled-coil domain containing 93provided by ZNC
Primary source
ZFIN:ZDB-GENE-060421-8315
See related
Ensembl:ENSDARG00000040678 AllianceGenome:ZFIN:ZDB-GENE-060421-8315
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:136790
Summary
Predicted to be involved in Golgi to plasma membrane transport. Orthologous to human CCDC93 (coiled-coil domain containing 93). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See ccdc93 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (38353452..38368138, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (38543657..38558351, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene transcription factor CP2-like 1 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 Neighboring gene phospholipase C, delta 4b Neighboring gene zinc finger protein 142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC136790

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 93

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040324.1 → NP_001035414.1  coiled-coil domain-containing protein 93

    See identical proteins and their annotated locations for NP_001035414.1

    Status: PROVISIONAL

    Source sequence(s)
    BC115269
    UniProtKB/TrEMBL
    A0A8M1N8S5, Q1RLV7
    Related
    ENSDARP00000059573.6, ENSDART00000059574.8
    Conserved Domains (1) summary
    pfam09762
    Location:52 → 220
    KOG2701; Coiled-coil domain-containing protein (DUF2037)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    38353452..38368138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304844.4 → XP_009303119.1  coiled-coil domain-containing protein 93 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B5S9
    Conserved Domains (1) summary
    pfam09762
    Location:52 → 220
    KOG2701; Coiled-coil domain-containing protein (DUF2037)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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