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rell2 RELT like 2 [ Danio rerio (zebrafish) ]

Gene ID: 678542, updated on 4-Jan-2025

Summary

Official Symbol
rell2provided by ZNC
Official Full Name
RELT like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-060421-6581
See related
Ensembl:ENSDARG00000071876 AllianceGenome:ZFIN:ZDB-GENE-060421-6581
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:136859
Summary
Predicted to be involved in positive regulation of cell-substrate adhesion and positive regulation of p38MAPK cascade. Predicted to be located in membrane. Orthologous to human RELL2 (RELT like 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See rell2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (9456675..9475845)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (9150661..9170522)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene high mobility group nucleosome binding domain 6 Neighboring gene RING finger protein 148 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5 Neighboring gene atonal bHLH transcription factor 8

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC136859

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in positive regulation of cell-substrate adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of p38MAPK cascade IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within positive regulation of p38MAPK cascade IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040301.1NP_001035391.1  RELT-like protein 2

    See identical proteins and their annotated locations for NP_001035391.1

    Status: PROVISIONAL

    Source sequence(s)
    BC115295
    UniProtKB/TrEMBL
    A0A8M2B415, Q1RLT5
    Related
    ENSDARP00000063558.5, ENSDART00000063559.6
    Conserved Domains (1) summary
    pfam12606
    Location:2845
    RELT; Tumour necrosis factor receptor superfamily member 19

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    9456675..9475845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157154.5XP_005157211.1  RELT-like protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005157211.1

    UniProtKB/TrEMBL
    A0A8M2B415, Q1RLT5
    Conserved Domains (1) summary
    pfam12606
    Location:2845
    RELT; Tumour necrosis factor receptor superfamily member 19
  2. XM_068213240.1XP_068069341.1  RELT-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B415, Q1RLT5

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395311.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    221497..234768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)