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rpl31 ribosomal protein L31 [ Danio rerio (zebrafish) ]

Gene ID: 677758, updated on 9-Dec-2024

Summary

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Official Symbol
rpl31provided by ZNC
Official Full Name
ribosomal protein L31provided by ZNC
Primary source
ZFIN:ZDB-GENE-060331-121
See related
Ensembl:ENSDARG00000053365 AllianceGenome:ZFIN:ZDB-GENE-060331-121
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fe38a04; wu:fe38a04; zgc:136896
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL31 (ribosomal protein L31). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See rpl31 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (56225410..56232296, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (56637635..56644521, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496516 Neighboring gene ectodysplasin A receptor Neighboring gene uncharacterized LOC100333807 Neighboring gene TBC1 domain family member 8 Neighboring gene CCR4-NOT transcription complex, subunit 11 Neighboring gene lymphocyte cytosolic protein 1 (L-plastin)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Genome Editing in Zebrafish by ScCas9 Recognizing NNG PAM. Liu Y, et al. Cells, 2021 Aug 16. PMID 34440868, Free PMC Article
  2. An environmentally relevant mixture of polychlorinated biphenyls (PCBs) and polybrominated diphenylethers (PBDEs) disrupts mitochondrial function, lipid metabolism and neurotransmission in the brain of exposed zebrafish and their unexposed F2 offspring. Blanc M, et al. Sci Total Environ, 2021 Feb 1. PMID 32911150
  3. Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. Zheng W, et al. PLoS One, 2013. PMID 23349717, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC136896

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein eL31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040052.2 → NP_001035141.1  large ribosomal subunit protein eL31

    See identical proteins and their annotated locations for NP_001035141.1

    Status: VALIDATED

    Source sequence(s)
    CU914623, EH441458, EH539710
    UniProtKB/TrEMBL
    A0A8M1N8J6, Q24JV3
    Related
    ENSDARP00000124804.1, ENSDART00000149554.3
    Conserved Domains (1) summary
    pfam01198
    Location:17 → 98
    Ribosomal_L31e; Ribosomal protein L31e

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    56225410..56232296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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