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Alyreffm13 Aly/REF export factor family member 13 [ Mus musculus (house mouse) ]

Gene ID: 667692, updated on 27-Nov-2024

Summary

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Official Symbol
Alyreffm13provided by MGI
Official Full Name
Aly/REF export factor family member 13provided by MGI
Primary source
MGI:MGI:3643666
See related
Ensembl:ENSMUSG00000097878 AllianceGenome:MGI:3643666
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm8764; EG667692
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Alyreffm13 in Genome Data Viewer
Location:
10 D1; 10 54.72 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (103995867..103998305)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (104160006..104162444)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene Aly/REF export factor family member 11 Neighboring gene Aly/REF export factor family member 14 Neighboring gene Aly/REF export factor family member 16 Neighboring gene Aly/REF export factor family member 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RNA and export factor-binding protein 2-like
Names
THO complex 4 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270900.1 → NP_001257829.1  RNA and export factor-binding protein 2-like

    See identical proteins and their annotated locations for NP_001257829.1

    Status: VALIDATED

    Source sequence(s)
    AC192091
    Consensus CDS
    CCDS78891.1
    UniProtKB/TrEMBL
    M0QWB2, M0QWR4
    Related
    ENSMUSP00000137930.4, ENSMUST00000181179.5
    Conserved Domains (3) summary
    COG0724
    Location:79 → 186
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12680
    Location:86 → 160
    RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
    pfam07078
    Location:6 → 59
    FYTT; Forty-two-three protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    103995867..103998305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314061.1 → XP_017169550.1  RNA and export factor-binding protein 2-like isoform X1

    UniProtKB/TrEMBL
    M0QWB2, M0QWR4
    Conserved Domains (3) summary
    cd12680
    Location:86 → 160
    RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
    TIGR01648
    Location:26 → 179
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam13865
    Location:169 → 230
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1

  2. XM_030245222.1 → XP_030101082.1  RNA and export factor-binding protein 2-like isoform X2

    UniProtKB/TrEMBL
    M0QWB2, M0QWR4
    Conserved Domains (3) summary
    cd12680
    Location:86 → 160
    RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
    TIGR01648
    Location:26 → 179
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam13865
    Location:169 → 229
    FoP_duplication; C-terminal duplication domain of Friend of PRMT1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_018925.1: Suppressed sequence

    Description
    NG_018925.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version

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