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Ribc1 RIB43A domain with coiled-coils 1 [ Mus musculus (house mouse) ]

Gene ID: 66611, updated on 27-Nov-2024

Summary

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Official Symbol
Ribc1provided by MGI
Official Full Name
RIB43A domain with coiled-coils 1provided by MGI
Primary source
MGI:MGI:1913861
See related
Ensembl:ENSMUSG00000025257 AllianceGenome:MGI:1913861
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610028I09Rik
Summary
Involved in flagellated sperm motility. Is active in axonemal A tubule inner sheath and sperm flagellum. Orthologous to human RIBC1 (RIB43A domain with coiled-coils 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 6.4), CNS E11.5 (RPKM 0.9) and 11 other tissues See more
Orthologs
human all
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Genomic context

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See Ribc1 in Genome Data Viewer
Location:
X F3; X 68.46 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (150787576..150799884, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (152004580..152016886, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene hydroxysteroid (17-beta) dehydrogenase 10 Neighboring gene predicted gene, 39540 Neighboring gene STARR-seq mESC enhancer starr_48089 Neighboring gene structural maintenance of chromosomes 1A Neighboring gene predicted gene 15267 Neighboring gene predicted gene 15266

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Chromosomal domains and escape from X inactivation: comparative X inactivation analysis in mouse and human. Tsuchiya KD, et al. Mamm Genome, 2000 Oct. PMID 11003698
  2. Structures of sperm flagellar doublet microtubules expand the genetic spectrum of male infertility. Zhou L, et al. Cell, 2023 Jun 22. PMID 37295417
  3. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in flagellated sperm motility IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in axonemal A tubule inner sheath IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in axonemal A tubule inner sheath TAS
Traceable Author Statement
more info
 PubMed 
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in sperm flagellum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RIB43A-like with coiled-coils protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025660.3 → NP_079936.1  RIB43A-like with coiled-coils protein 1

    Status: VALIDATED

    Source sequence(s)
    AK011592, AL672180
    Consensus CDS
    CCDS30472.1
    UniProtKB/Swiss-Prot
    Q9CS97, Q9D0B8
    Related
    ENSMUSP00000026288.5, ENSMUST00000026288.5
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 379
    RIB43A

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    150787576..150799884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528966.5 → XP_006529029.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9CS97, Q9D0B8
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 379
    RIB43A

  2. XM_006528967.5 → XP_006529030.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9CS97, Q9D0B8
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 379
    RIB43A

  3. XM_006528965.5 → XP_006529028.1  RIB43A-like with coiled-coils protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9CS97, Q9D0B8
    Conserved Domains (1) summary
    pfam05914
    Location:4 → 379
    RIB43A
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D0B8.1 GenPept UniProtKB/Swiss-Prot:Q9D0B8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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