trim55b tripartite motif containing 55b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: trim55bprovided by ZNC
Official Full Name: tripartite motif containing 55bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-060312-37
See related: Ensembl:ENSDARG00000058158 AllianceGenome:ZFIN:ZDB-GENE-060312-37
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7145460; zgc:136833
Summary: Predicted to enable zinc ion binding activity. Is expressed in adaxial cell; cardiovascular system; muscle; and testis. Orthologous to human TRIM55 (tripartite motif containing 55). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 24

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (24831727..24846603)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (24686391..24701429)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tripartite motif-containing protein 55b

Names: MuRF2B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001039982.1 → NP_001035071.1 tripartite motif-containing protein 55b

See identical proteins and their annotated locations for NP_001035071.1

Status: PROVISIONAL

Source sequence(s)

BC114283

UniProtKB/TrEMBL

A0A8M1N8I7, A0A8M2B9N2, Q29RB6

Related

ENSDARP00000075413.3, ENSDART00000080969.4

Conserved Domains (3) summary

smart00336
Location:108 → 148

BBOX; B-Box-type zinc finger

cd00162
Location:10 → 68

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl23765
Location:155 → 280

iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits