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LOC6616506 beta-1-syntrophin [ Drosophila sechellia ]

Gene ID: 6616506, updated on 10-May-2024

Summary

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Gene symbol
LOC6616506
Gene description
beta-1-syntrophin
Locus tag
Dsec_GM22110
See related
EnsemblRapid:LOC6616506
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM22110; GM22110-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6616506 in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 3L NC_045951.1 (21195222..21214276, complement)

Chromosome 3L - NC_045951.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6616504 Neighboring gene uncharacterized LOC6616505 Neighboring gene uncharacterized LOC6616507 Neighboring gene uncharacterized LOC6616508 Neighboring gene uncharacterized LOC116801158 Neighboring gene protein embryonic gonad

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045951.1 Chromosome 3L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1-syntrophin
Names
Dsec\GM22110
Dsec\GM22110-PA
dsec_GLEANR_4906

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045951.1 Reference ASM438219v1

    Range
    21195222..21214276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002040830.2 → XP_002040866.1  beta-1-syntrophin isoform X2

    See identical proteins and their annotated locations for XP_002040866.1

    UniProtKB/TrEMBL
    B4IAV6
    Related
    XP_002040866.1, XM_002040830.2
    Conserved Domains (3) summary
    cd00992
    Location:163 → 244
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01258
    Location:293 → 351
    PHsplit_syntrophin; Syntrophin Split Pleckstrin homology (PH) domain
    cl17171
    Location:30 → 61
    PH-like; Pleckstrin homology-like domain

  2. XM_032718639.1 → XP_032574530.1  beta-1-syntrophin isoform X1

    Related
    XP_032574530.1, XM_032718639.1
    Conserved Domains (3) summary
    cd00992
    Location:163 → 244
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam18012
    Location:289 → 347
    PH_17; PH domain
    cl17171
    Location:30 → 61
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein Strain
Heading Accession and Version

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