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LOC6499462 paired box pox-meso protein [ Drosophila ananassae ]

Gene ID: 6499462, updated on 10-May-2024

Summary

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Gene symbol
LOC6499462
Gene description
paired box pox-meso protein
Locus tag
Dana_GF16668
See related
EnsemblRapid:LOC6499462
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila ananassae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GF16668; GF16668-PB
Orthologs
fruit fly all
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Genomic context

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See LOC6499462 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1763931v2 (GCF_017639315.1) 2L NC_057927.1 (13325358..13341950, complement)
101 previous assembly DanaRS2.1 (GCF_003285975.2) Unplaced Scaffold NW_022473262.1 (13351738..13367524, complement)

Chromosome 2L - NC_057927.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6499464 Neighboring gene uncharacterized LOC6501116 Neighboring gene eukaryotic initiation factor 4A-III Neighboring gene ubiquinone biosynthesis protein COQ2, mitochondrial Neighboring gene Copper transporter 1B Neighboring gene Cytochrome c oxidase subunit 7A Neighboring gene ADP ribosylation factor-like 2 Neighboring gene Polynucleotide kinase 3'-phosphatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box pox-meso protein
Names
Dana\GF16668
Dana\GF16668-PB
dana_GLEANR_17934

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila ananassae Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1763931v2

Genomic

  1. NC_057927.1 Reference ASM1763931v2

    Range
    13325358..13341950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001954550.4 → XP_001954586.2  paired box pox-meso protein isoform X1

    UniProtKB/TrEMBL
    B3M0E1
    Related
    XP_001954586.2, XM_001954550.4
    Conserved Domains (1) summary
    smart00351
    Location:10 → 133
    PAX; Paired Box domain

  2. XM_044718337.1 → XP_044574272.1  paired box pox-meso protein isoform X2

    Related
    XP_044574272.1, XM_044718337.1
    Conserved Domains (1) summary
    smart00351
    Location:2 → 102
    PAX; Paired Box domain
Nucleotide Protein Strain
Heading Accession and Version

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Research Materials