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F15B9.10 TPM domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 6418727, updated on 2-Nov-2024

Summary

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Official Symbol
F15B9.10
Official Full Name
TPM domain-containing protein
Primary source
WormBase:WBGene00045418
Locus tag
CELE_F15B9.10
See related
AllianceGenome:WB:WBGene00045418
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of acetylcholine-gated channel complex. Predicted to be active in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F15B9.10 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (13006970..13008925, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DUF148 domain-containing protein Neighboring gene FH2 domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Ala Neighboring gene Peptidase S1 domain-containing protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of acetylcholine-gated channel complex IEA
Inferred from Electronic Annotation
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TPM domain-containing protein
NP_001256473.1
  • Confirmed by transcript evidence
NP_001256474.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13006970..13008925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269545.2 → NP_001256474.1  TPM domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256474.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5Z2T9
    Conserved Domains (1) summary
    pfam04536
    Location:51 → 174
    TPM; TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase

  2. NM_001269544.3 → NP_001256473.1  TPM domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256473.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    I2HA81
    Conserved Domains (1) summary
    pfam04536
    Location:51 → 174
    TPM; TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase
Nucleotide Protein
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