U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Lce3d late cornified envelope 3D [ Mus musculus (house mouse) ]

Gene ID: 630994, updated on 27-Nov-2024

Summary

Official Symbol
Lce3dprovided by MGI
Official Full Name
late cornified envelope 3Dprovided by MGI
Primary source
MGI:MGI:3642919
See related
Ensembl:ENSMUSG00000043472 AllianceGenome:MGI:3642919
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm9782
Summary
Orthologous to several human genes including LCE3B (late cornified envelope 3B) and LCE3C (late cornified envelope 3C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward stomach adult (RPKM 91.0) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Lce3d in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92864695..92865881)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92957390..92958574)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene late cornified envelope 3C Neighboring gene predicted gene, 24481 Neighboring gene predicted gene, 22577 Neighboring gene late cornified envelope 3E

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
late cornified envelope 3D
Names
predicted pseudogene 9782

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270426.2NP_001257355.1  late cornified envelope 3D

    Status: VALIDATED

    Source sequence(s)
    AC132274
    Consensus CDS
    CCDS57228.1
    UniProtKB/TrEMBL
    E9Q8V1
    Related
    ENSMUSP00000130993.3, ENSMUST00000059053.11

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92864695..92865881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)