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Fam43b family with sequence similarity 43, member B [ Mus musculus (house mouse) ]

Gene ID: 625638, updated on 27-Nov-2024

Summary

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Official Symbol
Fam43bprovided by MGI
Official Full Name
family with sequence similarity 43, member Bprovided by MGI
Primary source
MGI:MGI:3651622
See related
Ensembl:ENSMUSG00000078235 AllianceGenome:MGI:3651622
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human FAM43B (family with sequence similarity 43 member B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Fam43b in Genome Data Viewer
Location:
4 D3; 4 70.23 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (138121403..138123769, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (138394092..138396458, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10270 Neighboring gene microRNA 7019 Neighboring gene PTEN induced putative kinase 1 Neighboring gene cytidine deaminase Neighboring gene hypothetical protein, MNCb-2457 Neighboring gene ribosomal protein L38, pseudogene 1 Neighboring gene STARR-positive B cell enhancer ABC_E8003 Neighboring gene mitochondrial ubiquitin ligase activator of NFKB 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein FAM43B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081672.2 → NP_001075141.1  protein FAM43B

    Status: VALIDATED

    Source sequence(s)
    AK134570, AL807249, BB677246
    Consensus CDS
    CCDS38928.1
    UniProtKB/TrEMBL
    A2AM80
    Related
    ENSMUSP00000100649.3, ENSMUST00000105032.4
    Conserved Domains (1) summary
    pfam14719
    Location:71 → 263
    PID_2; Phosphotyrosine interaction domain (PTB/PID)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    138121403..138123769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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