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RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6241377, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT5G08695
Locus tag
AT5G08695
See related
Araport:AT5G08695
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Sequence:
Chromosome: 5; NC_003076.8 (2829193..2834695)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ATP synthase alpha/beta family protein Neighboring gene ATP synthase alpha/beta family protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001125721.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-binding (RRM/RBD/RNP motifs) family protein
NP_001119193.1
  • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding;RNA binding (TAIR:AT4G19610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2829193..2834695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125721.1 → NP_001119193.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119193.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y2L0, A0A654FZJ0, F4KCG5
    Conserved Domains (5) summary
    cd12316
    Location:228 → 301
    RRM3_RBM19_RRM2_MRD1; RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and RNA recognition motif 2 found in multiple RNA-binding domain-containing protein 1 (MRD1)
    cd12317
    Location:421 → 492
    RRM4_RBM19_RRM3_MRD1; RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 in multiple RNA-binding domain-containing protein 1 (MRD1)
    cd12565
    Location:4 → 79
    RRM1_MRD1; RNA recognition motif 1 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins
    TIGR01661
    Location:229 → 618
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:536 → 615
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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