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Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6241268, updated on 18-Sep-2024

Summary

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Official Full Name
Putative endonuclease or glycosyl hydrolase
Primary source
TAIR:AT1G01355
Locus tag
AT1G01355
See related
Araport:AT1G01355
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (138489..139680)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel 10 Neighboring gene Zinc finger (CCCH-type/C3HC4-type RING finger) family protein Neighboring gene regulatory component of ABA receptor 1 Neighboring gene Histone superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA nuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Putative endonuclease or glycosyl hydrolase
NP_001117206.1
  • Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    138489..139680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331267.1 → NP_001323010.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVR8, A0A5S9S2F3

  2. NM_001123734.2 → NP_001117206.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117206.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654E734, F4HSA3
    Conserved Domains (2) summary
    cd10910
    Location:10 → 146
    limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
    cl02684
    Location:177 → 199
    zf-DBF; DBF zinc finger

  3. NM_001331268.1 → NP_001323011.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AVW5, A0A654E734
Nucleotide Protein
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