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Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6241016, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin-like superfamily protein
Primary source
TAIR:AT5G55856
Locus tag
AT5G55856
See related
Araport:AT5G55856
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (22607927..22608640)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RPM1-interacting protein 4 (RIN4) family protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ubiquitin-like superfamily protein
NP_001119444.1
  • Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 1 (TAIR:AT4G26840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22607927..22608640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125972.1 → NP_001119444.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119444.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H5R8
    UniProtKB/TrEMBL
    A0A654GBB8
    Conserved Domains (2) summary
    smart00213
    Location:15 → 82
    UBQ; Ubiquitin homologues
    cl00155
    Location:11 → 90
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B3H5R8.1

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