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Embryo-specific protein 3, (ATS3) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6240499, updated on 18-Sep-2024

Summary

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Official Full Name
Embryo-specific protein 3, (ATS3)
Primary source
TAIR:AT2G41475
Locus tag
AT2G41475
See related
Araport:AT2G41475
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (17294978..17296565, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein Neighboring gene F-box family protein Neighboring gene peroxidase superfamily protein Neighboring gene UDP-glcnac-adolichol phosphate glcnac-1-p-transferase Neighboring gene WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis lectin EULS3 is involved in stomatal closure. Van Hove J, et al. Plant Sci, 2015 Sep. PMID 26259197
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001125029.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Embryo-specific protein 3, (ATS3)
NP_001118501.1
  • Embryo-specific protein 3, (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT5G62200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17294978..17296565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125029.2 → NP_001118501.1  Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118501.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80821, Q681K2
    UniProtKB/TrEMBL
    A0A178VX80, A0A5S9X664
    Conserved Domains (1) summary
    pfam06232
    Location:35 → 158
    ATS3; Embryo-specific protein 3, (ATS3)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q681K2.1

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