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CPuORF54 conserved peptide upstream open reading frame 54 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6240307, discontinued on 14-Sep-2016
  • This record was discontinued.

Summary

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Gene symbol
CPuORF54
Gene description
conserved peptide upstream open reading frame 54
Locus tag
AT1G25472
See related
TAIR:AT1G25472
Gene type
protein coding
RNA name
conserved peptide upstream open reading frame 54
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
conserved peptide upstream open reading frame 54; CPuORF54
Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF54 represents a conserved upstream opening reading frame relative to major ORF AT1G25470.1
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (8945873..8946243, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
conserved peptide upstream open reading frame 54
NP_001117354.1
  • conserved peptide upstream open reading frame 54 (CPuORF54); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 53 (TAIR:AT1G68552.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8945873..8946243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001123882.2 → NP_001117354.1  conserved peptide upstream open reading frame 54 [Arabidopsis thaliana]

    Status: REVIEWED

Protein Accession Links
GenPept Link UniProtKB Link
AEE30630.1

Gene LinkOut

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