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Albfm1 albumin superfamily member 1 [ Mus musculus (house mouse) ]

Gene ID: 622307, updated on 27-Nov-2024

Summary

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Official Symbol
Albfm1provided by MGI
Official Full Name
albumin superfamily member 1provided by MGI
Primary source
MGI:MGI:1923342
See related
Ensembl:ENSMUSG00000070690 AllianceGenome:MGI:1923342
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Arg; Gm17754; 5830473C10Rik
Summary
Predicted to be active in cytoplasm. Is expressed in liver and metanephros. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in liver adult (RPKM 9.4), liver E18 (RPKM 3.6) and 1 other tissue See more
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Genomic context

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See Albfm1 in Genome Data Viewer
Location:
5 E1; 5 44.78 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (90708485..90745986)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (90560626..90598127)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene afamin Neighboring gene zinc finger, BED domain containing 4 pseudogene Neighboring gene predicted gene, 42109 Neighboring gene STARR-positive B cell enhancer ABC_E4764 Neighboring gene Ras association (RalGDS/AF-6) domain family member 6 Neighboring gene STARR-seq mESC enhancer starr_13601 Neighboring gene STARR-seq mESC enhancer starr_13602 Neighboring gene STARR-seq mESC enhancer starr_13603 Neighboring gene predicted gene, 36084

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Alpha-fetoprotein related gene (ARG): a new member of the albumin gene family that is no longer functional in primates. Naidu S, et al. Gene, 2010 Jan 1. PMID 19733224, Free PMC Article
  2. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851
  3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
alpha-fetoprotein related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252661.1 → NP_001239590.1  alpha-fetoprotein related protein

    Status: VALIDATED

    Source sequence(s)
    AC135240, BB032759, CB521232
    Consensus CDS
    CCDS57355.1
    UniProtKB/TrEMBL
    F8VQ07
    Related
    ENSMUSP00000092198.5, ENSMUST00000094615.8
    Conserved Domains (1) summary
    pfam00273
    Location:224 → 395
    Serum_albumin; Serum albumin family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    90708485..90745986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254748.1 → XP_030110608.1  alpha-fetoprotein related protein isoform X4

    Conserved Domains (1) summary
    pfam00273
    Location:224 → 395
    Serum_albumin; Serum albumin family

  2. XM_006535174.4 → XP_006535237.1  alpha-fetoprotein related protein isoform X6

    UniProtKB/TrEMBL
    A0A0J9YV75
    Related
    ENSMUSP00000144527.2, ENSMUST00000200765.2
    Conserved Domains (1) summary
    pfam00273
    Location:224 → 395
    Serum_albumin; Serum albumin family

  3. XM_006535168.3 → XP_006535231.1  alpha-fetoprotein related protein isoform X1

    Conserved Domains (1) summary
    pfam00273
    Location:213 → 384
    Serum_albumin; Serum albumin family

  4. XM_006535169.3 → XP_006535232.1  alpha-fetoprotein related protein isoform X2

    Conserved Domains (1) summary
    pfam00273
    Location:195 → 366
    Serum_albumin; Serum albumin family

  5. XM_006535172.3 → XP_006535235.1  alpha-fetoprotein related protein isoform X3

    See identical proteins and their annotated locations for XP_006535235.1

    Conserved Domains (1) summary
    pfam00273
    Location:175 → 346
    Serum_albumin; Serum albumin family

  6. XM_006535170.3 → XP_006535233.1  alpha-fetoprotein related protein isoform X3

    See identical proteins and their annotated locations for XP_006535233.1

    Conserved Domains (1) summary
    pfam00273
    Location:175 → 346
    Serum_albumin; Serum albumin family

  7. XM_006535171.3 → XP_006535234.1  alpha-fetoprotein related protein isoform X3

    See identical proteins and their annotated locations for XP_006535234.1

    Conserved Domains (1) summary
    pfam00273
    Location:175 → 346
    Serum_albumin; Serum albumin family

  8. XM_036165399.1 → XP_036021292.1  alpha-fetoprotein related protein isoform X5

    Conserved Domains (1) summary
    pfam00273
    Location:18 → 189
    Serum_albumin; Serum albumin family

RNA

  1. XR_389286.4 RNA Sequence

  2. XR_389287.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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