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rbm26 RNA binding motif protein 26 [ Danio rerio (zebrafish) ]

Gene ID: 619195, updated on 9-Dec-2024

Summary

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Official Symbol
rbm26provided by ZNC
Official Full Name
RNA binding motif protein 26provided by ZNC
Primary source
ZFIN:ZDB-GENE-050706-50
See related
Ensembl:ENSDARG00000104130 AllianceGenome:ZFIN:ZDB-GENE-050706-50
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc66d05; wu:fc66d05; zgc:109736
Summary
Predicted to enable RNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM26 (RNA binding motif protein 26). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See rbm26 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (4371100..4401247)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (4210983..4241150)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene STE20 related adaptor beta Neighboring gene neurobeachin-like 1 Neighboring gene uncharacterized LOC110439856 Neighboring gene uncharacterized LOC137495907 Neighboring gene ORC ubiquitin ligase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC109736

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    4371100..4401247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002662263.7 → XP_002662309.4  RNA-binding protein 26

    UniProtKB/TrEMBL
    A0A0R4IYE4, A0A8M1RQZ3
    Related
    ENSDARP00000141476.1, ENSDART00000168973.2
    Conserved Domains (6) summary
    smart00356
    Location:302 → 322
    ZnF_C3H1; zinc finger
    COG0724
    Location:453 → 740
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12258
    Location:886 → 957
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    pfam12018
    Location:731 → 853
    DUF3508; Domain of unknown function (DUF3508)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:537 → 612
    RRM_SF; RNA recognition motif (RRM) superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033588.1: Suppressed sequence

    Description
    NM_001033588.1: This RefSeq was temporarily suppressed because there is insufficient transcript data. The draft reference genome sequence cannot be used because it appears to contain errors such that the correct protein cannot be represented.
Nucleotide Protein
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