U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

STX18 syntaxin 18 [ Bos taurus (domestic cattle) ]

Gene ID: 614135, updated on 29-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
STX18provided by VGNC
Official Full Name
syntaxin 18provided by VGNC
Primary source
VGNC:VGNC:35434
See related
Ensembl:ENSBTAG00000005712
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See STX18 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (104587343..104705747)

Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112447021 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene neuronal vesicle trafficking associated 1 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene Ly1 antibody reactive

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
syntaxin-18

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099719.1 → NP_001093189.1  syntaxin-18

    See identical proteins and their annotated locations for NP_001093189.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142214
    UniProtKB/TrEMBL
    A0AAA9TQ90, A5PJR7, F1N1W6
    Related
    ENSBTAP00070035158.1, ENSBTAT00070059309.1
    Conserved Domains (2) summary
    cd15850
    Location:246 → 304
    SNARE_syntaxin18; SNARE motif, subgroup Qa
    pfam10496
    Location:4 → 96
    Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    104587343..104705747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059887641.1 → XP_059743624.1  syntaxin-18 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S7V2

  2. XM_024993409.2 → XP_024849177.1  syntaxin-18 isoform X1

    UniProtKB/TrEMBL
    A0AAA9S7V2
    Related
    ENSBTAP00070035146.1, ENSBTAT00070059286.1
    Conserved Domains (2) summary
    cd15850
    Location:165 → 223
    SNARE_syntaxin18; SNARE motif, subgroup Qa
    pfam05104
    Location:62 → 132
    Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.