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traf3ip2a TRAF3 interacting protein 2a [ Danio rerio (zebrafish) ]

Gene ID: 606616, updated on 9-Dec-2024

Summary

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Official Symbol
traf3ip2aprovided by ZNC
Official Full Name
TRAF3 interacting protein 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050809-60
See related
AllianceGenome:ZFIN:ZDB-GENE-050809-60
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7158179
Summary
Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis and psoriasis 13. Orthologous to human TRAF3IP2 (TRAF3 interacting protein 2). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See traf3ip2a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3403851..3424139)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (3386552..3405883)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 4B Neighboring gene REV3 like, DNA directed polymerase zeta catalytic subunit Neighboring gene exostosin-1 Neighboring gene uncharacterized LOC137488608 Neighboring gene cnksr family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
E3 ubiquitin ligase TRAF3IP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    3403851..3424139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173802.5 → XP_005173859.2  E3 ubiquitin ligase TRAF3IP2

    UniProtKB/TrEMBL
    A0A8M2BL35
Nucleotide Protein Strain
Heading Accession and Version

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