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RPL13A ribosomal protein L13a [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 574314, updated on 5-Mar-2024

Summary

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Gene symbol
RPL13A
Gene description
ribosomal protein L13a
See related
Ensembl:ENSMMUG00000007551
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See RPL13A in Genome Data Viewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (49442936..49447649)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (44872666..44877383)

Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene PIH1 domain containing 1 Neighboring gene aldehyde dehydrogenase 16 family member A1 Neighboring gene fms related receptor tyrosine kinase 3 ligand Neighboring gene small nucleolar RNA Z195/SNORD33/SNORD32 family Neighboring gene small nucleolar RNA Z195/SNORD33/SNORD32 family Neighboring gene small nucleolar RNA SNORD34 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene ribosomal protein S11 Neighboring gene microRNA mir-150

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. Magness CL, et al. Genome Biol, 2005. PMID 15998449, Free PMC Article
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein uL13; 60S ribosomal protein L13a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195419.1 → NP_001182348.1  large ribosomal subunit protein uL13

    See identical proteins and their annotated locations for NP_001182348.1

    Status: VALIDATED

    Source sequence(s)
    DR770734
    UniProtKB/TrEMBL
    F6T7R1, H9YV34
    Related
    ENSMMUP00000009906.3, ENSMMUT00000010560.4
    Conserved Domains (1) summary
    PTZ00068
    Location:6 → 200
    PTZ00068; 60S ribosomal protein L13a; Provisional

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041772.1 Reference Mmul_10 Primary Assembly

    Range
    49442936..49447649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015124373.2 → XP_014979859.1  60S ribosomal protein L13a isoform X1

    UniProtKB/TrEMBL
    B5MBT6
    Conserved Domains (1) summary
    cl00333
    Location:1 → 139
    Ribosomal_L13; Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the ...

  2. XM_015124372.2 → XP_014979858.1  60S ribosomal protein L13a isoform X1

    UniProtKB/TrEMBL
    B5MBT6
    Conserved Domains (1) summary
    cl00333
    Location:1 → 139
    Ribosomal_L13; Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the ...
Nucleotide Protein
Heading Accession and Version

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