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CG34334 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 5740122, updated on 9-Dec-2024

Summary

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Official Symbol
CG34334provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0263829
Locus tag
Dmel_CG34334
See related
AllianceGenome:FB:FBgn0263829
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
cg9561; CG9561; Dmel\CG34334
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG34334 in Genome Data Viewer
Location:
20F1-20F1; 1-66 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (22872812..22875367)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (22274648..22277203)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene folded gastrulation Neighboring gene mir-2491 stem loop Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR43656 Neighboring gene long non-coding RNA:CR41352 Neighboring gene CTD nuclear envelope phosphatase 1 regulatory subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The exon junction complex: a splicing factor for long intron containing transcripts? Ashton-Beaucage D, et al. Fly (Austin), 2011 Jul-Sep. PMID 21478676
  2. Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster. Combs PA, et al. F1000Res, 2017. PMID 28299188, Free PMC Article
  3. The drosophila melanogaster genome: translation factors and RNA binding proteins. Lasko P. J Cell Biol, 2000 Jul 24. PMID 10908586, Free PMC Article
  4. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
  5. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of ASAP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG34334-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    22872812..22875367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001103572.2 → NP_001097042.1  uncharacterized protein Dmel_CG34334 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097042.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q058R5, Q0IGP7
    Conserved Domains (2) summary
    COG0724
    Location:427 → 610
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12365
    Location:537 → 610
    RRM_RNPS1; RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0IGP7 Q0IGP7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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