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vps29 VPS29 retromer complex component [ Danio rerio (zebrafish) ]

Gene ID: 573437, updated on 9-Dec-2024

Summary

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Official Symbol
vps29provided by ZNC
Official Full Name
VPS29 retromer complex componentprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8764
See related
Ensembl:ENSDARG00000069521 AllianceGenome:ZFIN:ZDB-GENE-030131-8764
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb06g05; zgc:56191; zgc:86638; wu:fb06g05
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in endocytic recycling; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS29 (VPS29 retromer complex component). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See vps29 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (17005731..17011574)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (16969095..16974938)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene unc-5 netrin receptor Da Neighboring gene aquaporin 3b Neighboring gene family with sequence similarity 216 member A Neighboring gene GPN-loop GTPase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Migratory Neural Crest Cells Phagocytose Dead Cells in the Developing Nervous System. Zhu Y, et al. Cell, 2019 Sep 19. PMID 31495570, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC56191, MGC86638

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in endocytic recycling ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of retromer complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
  
part_of retromer complex ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 29
Names
vacuolar protein sorting 29 homolog
vesicle protein sorting 29
NP_956331.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200037.2 → NP_956331.1  vacuolar protein sorting-associated protein 29

    See identical proteins and their annotated locations for NP_956331.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045981
    UniProtKB/Swiss-Prot
    Q7ZV68
    Related
    ENSDARP00000092020.3, ENSDART00000101246.4
    Conserved Domains (1) summary
    cd07394
    Location:2 → 179
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    17005731..17011574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7ZV68.1 GenPept UniProtKB/Swiss-Prot:Q7ZV68

Gene LinkOut

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