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mypn myopalladin [ Danio rerio (zebrafish) ]

Gene ID: 571695, updated on 9-Dec-2024

Summary

Official Symbol
mypnprovided by ZNC
Official Full Name
myopalladinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-100721-5
See related
AllianceGenome:ZFIN:ZDB-GENE-100721-5
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fc17a02
Summary
Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1KK and nemaline myopathy 11. Orthologous to human MYPN (myopalladin). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See mypn in Genome Data Viewer
Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (50253629..50321910, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (49944741..50008624, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 137Ba Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 2 Neighboring gene G patch domain containing 11 Neighboring gene CDK2 associated cullin domain 1 Neighboring gene sirtuin 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365297.1NP_001352226.1  myopalladin isoform 1

    Status: VALIDATED

    Source sequence(s)
    CU928131, CU929278
    UniProtKB/TrEMBL
    A0A8N7UTI8
    Conserved Domains (4) summary
    pfam07679
    Location:236322
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:17751849
    Ig; Immunoglobulin domain
    cl26464
    Location:9981456
    Atrophin-1; Atrophin-1 family
    cl26557
    Location:375545
    RNase_E_G; Ribonuclease E/G family
  2. NM_001365298.1NP_001352227.1  myopalladin isoform 2

    Status: VALIDATED

    Source sequence(s)
    CU928131, CU929278
    UniProtKB/TrEMBL
    A0A8M9QNY4
    Conserved Domains (4) summary
    pfam07679
    Location:236322
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:17481822
    Ig; Immunoglobulin domain
    cl26464
    Location:9981456
    Atrophin-1; Atrophin-1 family
    cl26557
    Location:375545
    RNase_E_G; Ribonuclease E/G family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    50253629..50321910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068212922.1XP_068069023.1  myopalladin isoform X1