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zgc:174906 zgc:174906 [ Danio rerio (zebrafish) ]

Gene ID: 571548, updated on 4-Jan-2025

Summary

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Official Symbol
zgc:174906provided by ZNC
Official Full Name
zgc:174906provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6125
See related
Ensembl:ENSDARG00000075314 AllianceGenome:ZFIN:ZDB-GENE-030131-6125
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi35d01; wu:fi35d01
Summary
Predicted to act upstream of or within regulation of apoptotic process and signal transduction. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See zgc:174906 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (36443022..36449111, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (36344219..36350308, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909707 Neighboring gene cysteine sulfinic acid decarboxylase Neighboring gene LIM domain and actin binding 1a Neighboring gene U4 spliceosomal RNA Neighboring gene SPRY domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RNA structural dynamics regulate early embryogenesis through controlling transcriptome fate and function. Shi B, et al. Genome Biol, 2020 May 18. PMID 32423473, Free PMC Article
  2. Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish. Hu P, et al. Sci Rep, 2016 Jun 30. PMID 27356472, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC571548

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001115057.1 → NP_001108529.1  uncharacterized protein LOC571548

    See identical proteins and their annotated locations for NP_001108529.1

    Status: PREDICTED

    Source sequence(s)
    BC159226
    UniProtKB/TrEMBL
    B0JZL2
    Related
    ENSDARP00000097990.1, ENSDART00000110478.3
    Conserved Domains (2) summary
    cd01670
    Location:140 → 212
    Death; Death Domain: a protein-protein interaction domain
    cd01671
    Location:11 → 80
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    36443022..36449111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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