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wdr41 WD repeat domain 41 [ Danio rerio (zebrafish) ]

Gene ID: 571294, updated on 9-Dec-2024

Summary

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Official Symbol
wdr41provided by ZNC
Official Full Name
WD repeat domain 41provided by ZNC
Primary source
ZFIN:ZDB-GENE-050706-152
See related
Ensembl:ENSDARG00000009851 AllianceGenome:ZFIN:ZDB-GENE-050706-152
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj48d04; wu:fj48d04; zgc:110041
Summary
Predicted to act upstream of or within regulation of autophagy. Orthologous to human WDR41 (WD repeat domain 41). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See wdr41 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (7605803..7630093)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (7868135..7892425)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene tubulin cofactor a Neighboring gene orthopedia homeobox a Neighboring gene phosphodiesterase 8B Neighboring gene angiogenic factor with G patch and FHA domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC110041

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of autophagy IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
WD repeat-containing protein 41

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030261.2 → NP_001025432.2  WD repeat-containing protein 41

    Status: PROVISIONAL

    Source sequence(s)
    BC098539, CT679601
    UniProtKB/TrEMBL
    A0A8M1N7G3, F1Q4U0
    Related
    ENSDARP00000107806.2, ENSDART00000121813.4
    Conserved Domains (3) summary
    COG2319
    Location:25 → 426
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:42 → 80
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:34 → 344
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    7605803..7630093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468895.2 → XP_021324570.1  WD repeat-containing protein 41 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PU15
    Conserved Domains (2) summary
    sd00039
    Location:46 → 79
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:16 → 338
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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