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si:rp71-19m20.1 si:rp71-19m20.1 [ Danio rerio (zebrafish) ]

Gene ID: 570641, updated on 9-Dec-2024

Summary

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Official Symbol
si:rp71-19m20.1provided by ZNC
Official Full Name
si:rp71-19m20.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3509
See related
Ensembl:ENSDARG00000089828 AllianceGenome:ZFIN:ZDB-GENE-030131-3509
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc43b12; wu:fc43b12
Summary
Orthologous to several human genes including C10orf88 (chromosome 10 open reading frame 88). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See si:rp71-19m20.1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (11352654..11370935)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (11314341..11332988)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene guided entry of tail-anchored proteins factor 4 Neighboring gene ADAM metallopeptidase domain 9b Neighboring gene HtrA serine peptidase 1b Neighboring gene uncharacterized LOC137490434 Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ATPase PAAT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    11352654..11370935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_694146.9 → XP_699238.2  ATPase PAAT

    UniProtKB/TrEMBL
    A0A8M6Z9D3, A0A8N7T8L4, E7FEM4
    Related
    ENSDARP00000112326.2, ENSDART00000129495.4
    Conserved Domains (1) summary
    pfam14958
    Location:48 → 183
    DUF4506; Domain of unknown function (DUF4506)
Nucleotide Protein Strain
Heading Accession and Version

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