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ACKR3 atypical chemokine receptor 3 [ Homo sapiens (human) ]

Gene ID: 57007, updated on 27-Nov-2024

Summary

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Official Symbol
ACKR3provided by HGNC
Official Full Name
atypical chemokine receptor 3provided by HGNC
Primary source
HGNC:HGNC:23692
See related
Ensembl:ENSG00000144476 MIM:610376; AllianceGenome:HGNC:23692
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RDC1; CXCR7; RDC-1; CMKOR1; CXC-R7; CXCR-7; GPR159
Summary
This gene encodes a member of the G-protein coupled receptor family. Although this protein was earlier thought to be a receptor for vasoactive intestinal peptide (VIP), it is now considered to be an orphan receptor, in that its endogenous ligand has not been identified. The protein is also a coreceptor for human immunodeficiency viruses (HIV). Translocations involving this gene and HMGA2 on chromosome 12 have been observed in lipomas. [provided by RefSeq, Jul 2008]
Expression
Broad expression in placenta (RPKM 50.1), urinary bladder (RPKM 36.9) and 22 other tissues See more
Orthologs
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Genomic context

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See ACKR3 in Genome Data Viewer
Location:
2q37.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (236537122..236582354)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (237027450..237072880)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (237478468..237490997)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene IQ motif containing with AAA domain 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:237300037-237301236 Neighboring gene IQCA1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237338113-237338612 Neighboring gene ribosomal protein L3 pseudogene 5 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:237348547-237349746 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12475 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17359 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237458903-237459402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237459480-237460270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17362 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237475953-237476828 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237476829-237477704 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:237488204-237489403 Neighboring gene uncharacterized LOC107986001 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237509317-237509817 Neighboring gene uncharacterized LOC105373946

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. CXCR7: a novel tumor endothelial marker in renal cell carcinoma. Maishi N, et al. Pathol Int, 2012 May. PMID 22524658
  2. Activation of MAPK Signaling by CXCR7 Leads to Enzalutamide Resistance in Prostate Cancer. Li S, et al. Cancer Res, 2019 May 15. PMID 30952632, Free PMC Article
  3. CXCR7 contributes to the aggressive phenotype of cholangiocarcinoma cells. Gentilini A, et al. Biochim Biophys Acta Mol Basis Dis, 2019 Sep 1. PMID 31059778
  4. Estrogen represses CXCR7 gene expression by inhibiting the recruitment of NFκB transcription factor at the CXCR7 promoter in breast cancer cells. Kerdivel G, et al. Biochem Biophys Res Commun, 2013 Feb 22. PMID 23352615
  5. Overexpression of CXCR7 Is a Novel Prognostic Indicator in Gastric Cancer. Nambara S, et al. Dig Surg, 2017. PMID 27941339

See all (282) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Heterogeneous expression of the atypical chemokine receptor ACKR3 in glioblastoma patient-derived tissue samples and cell cultures.
    Title: Heterogeneous expression of the atypical chemokine receptor ACKR3 in glioblastoma patient-derived tissue samples and cell cultures.
  2. Conformational dynamics underlying atypical chemokine receptor 3 activation.
    Title: Conformational dynamics underlying atypical chemokine receptor 3 activation.
  3. Crosstalk between purinergic receptor P2Y11 and chemokine receptor CXCR7 is regulated by CXCR4 in human macrophages.
    Title: Crosstalk between purinergic receptor P2Y(11) and chemokine receptor CXCR7 is regulated by CXCR4 in human macrophages.
  4. Exploring the CXCR4/CXCR7/CXCL12 Axis in Primary Desmoid Tumors.
    Title: Exploring the CXCR4/CXCR7/CXCL12 Axis in Primary Desmoid Tumors.
  5. Regulation of the Hippo/YAP axis by CXCR7 in the tumorigenesis of gastric cancer.
    Title: Regulation of the Hippo/YAP axis by CXCR7 in the tumorigenesis of gastric cancer.
  6. Atypical Chemokine Receptor 3 "Senses" CXC Chemokine Receptor 4 Activation Through GPCR Kinase Phosphorylation.
    Title: Atypical Chemokine Receptor 3 "Senses" CXC Chemokine Receptor 4 Activation Through GPCR Kinase Phosphorylation.
  7. CXCL12-CXCR4/CXCR7 Axis in Cancer: from Mechanisms to Clinical Applications.
    Title: CXCL12-CXCR4/CXCR7 Axis in Cancer: from Mechanisms to Clinical Applications.
  8. BMP2 induces osteogenic differentiation through ACKR3 in mesenchymal stem cells.
    Title: BMP2 induces osteogenic differentiation through ACKR3 in mesenchymal stem cells.
  9. Reassessing the adrenomedullin scavenging function of ACKR3 in lymphatic endothelial cells.
    Title: Reassessing the adrenomedullin scavenging function of ACKR3 in lymphatic endothelial cells.
  10. ACKR3 orchestrates Hedgehog signaling to promote renal cell carcinoma progression.
    Title: ACKR3 orchestrates Hedgehog signaling to promote renal cell carcinoma progression.
Submit: New GeneRIF Correction See all GeneRIFs (249)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Oculomotor-abducens synkinesis
MedGen: C5543116 OMIM: 619215 GeneReviews: Not available
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Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables C-C chemokine binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables C-C chemokine receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables C-X-C chemokine binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables C-X-C chemokine receptor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables coreceptor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables scavenger receptor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in calcium-mediated signaling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
  
involved_in cell chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chemokine-mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in oculomotor nerve development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of cytosolic calcium ion concentration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of mesenchymal stem cell migration IEA
Inferred from Electronic Annotation
more info
  
involved_in receptor internalization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell surface IDA
Inferred from Direct Assay
more info
 PubMed 
located_in clathrin-coated pit IDA
Inferred from Direct Assay
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
  
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
atypical chemokine receptor 3
Names
C-X-C chemokine receptor type 7
G protein-coupled receptor
G-protein coupled receptor 159
G-protein coupled receptor RDC1 homolog
chemokine (C-X-C motif) receptor 7
chemokine orphan receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020311.3 → NP_064707.1  atypical chemokine receptor 3

    See identical proteins and their annotated locations for NP_064707.1

    Status: REVIEWED

    Source sequence(s)
    BC036661, BP426139, DQ822477
    Consensus CDS
    CCDS2516.1
    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986
    Related
    ENSP00000272928.3, ENST00000272928.4
    Conserved Domains (1) summary
    pfam00001
    Location:62 → 315
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    236537122..236582354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005246098.4 → XP_005246155.1  atypical chemokine receptor 3 isoform X1

    See identical proteins and their annotated locations for XP_005246155.1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986
    Conserved Domains (1) summary
    pfam00001
    Location:62 → 315
    7tm_1; 7 transmembrane receptor (rhodopsin family)

  2. XM_047445135.1 → XP_047301091.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

  3. XM_047445136.1 → XP_047301092.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

  4. XM_005246097.4 → XP_005246154.1  atypical chemokine receptor 3 isoform X1

    See identical proteins and their annotated locations for XP_005246154.1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986
    Conserved Domains (1) summary
    pfam00001
    Location:62 → 315
    7tm_1; 7 transmembrane receptor (rhodopsin family)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    237027450..237072880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054343068.1 → XP_054199043.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

  2. XM_054343064.1 → XP_054199039.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

  3. XM_054343067.1 → XP_054199042.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

  4. XM_054343065.1 → XP_054199040.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

  5. XM_054343063.1 → XP_054199038.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

  6. XM_054343066.1 → XP_054199041.1  atypical chemokine receptor 3 isoform X1

    UniProtKB/Swiss-Prot
    A8K6J4, P25106, Q53RV4, Q8NE10, Q92938, Q92986

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001047841.1: Suppressed sequence

    Description
    NM_001047841.1: This RefSeq was permanently suppressed because it has a none consensus splice site that does not have enough supporting evidence.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P25106.3 GenPept UniProtKB/Swiss-Prot:P25106

Gene LinkOut

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