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armc5 armadillo repeat containing 5 [ Danio rerio (zebrafish) ]

Gene ID: 569910, updated on 9-Dec-2024

Summary

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Official Symbol
armc5provided by ZNC
Official Full Name
armadillo repeat containing 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7382
See related
Ensembl:ENSDARG00000078083 AllianceGenome:ZFIN:ZDB-GENE-030131-7382
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fj13a12
Summary
Predicted to be involved in anatomical structure morphogenesis. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in ACTH-independent macronodular adrenal hyperplasia 2. Orthologous to human ARMC5 (armadillo repeat containing 5). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See armc5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (31043480..31058163, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (30912638..30927348, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100001051 Neighboring gene cytochrome c oxidase subunit 6A2 Neighboring gene si:dkey-66i24.7 Neighboring gene uncharacterized LOC569097

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in animal organ development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
armadillo repeat-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    31043480..31058163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474093.2 → XP_021329768.1  armadillo repeat-containing protein 5

    UniProtKB/TrEMBL
    A0A8M9PRW1, U3JA44
    Related
    ENSDARP00000127109.1, ENSDART00000152901.2
    Conserved Domains (1) summary
    sd00043
    Location:136 → 170
    ARM; armadillo repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394534.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    116742..131049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_693324.9 → XP_698416.4  armadillo repeat-containing protein 5

    UniProtKB/TrEMBL
    A0A8N7T8J6
    Conserved Domains (1) summary
    sd00043
    Location:136 → 170
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
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