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hmgn2 high mobility group nucleosomal binding domain 2 [ Danio rerio (zebrafish) ]

Gene ID: 569904, updated on 9-Dec-2024

Summary

Official Symbol
hmgn2provided by ZNC
Official Full Name
high mobility group nucleosomal binding domain 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-051030-81
See related
Ensembl:ENSDARG00000099572 AllianceGenome:ZFIN:ZDB-GENE-051030-81
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa22g10; wu:fa22g10; zgc:123210
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to several human genes including HMGN2 (high mobility group nucleosomal binding domain 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See hmgn2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (51181043..51184126)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (51316900..51319983)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene argonaute RISC component 1 Neighboring gene dehydrodolichyl diphosphate synthase Neighboring gene si:ch73-52f24.4 Neighboring gene serpin peptidase inhibitor, clade B (ovalbumin), member 14

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC123210

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in chromatin IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
non-histone chromosomal protein HMG-17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142543.2NP_001136015.1  non-histone chromosomal protein HMG-17

    See identical proteins and their annotated locations for NP_001136015.1

    Status: VALIDATED

    Source sequence(s)
    FQ323156
    UniProtKB/TrEMBL
    A0A8M1NQM9, Q3B732
    Related
    ENSDARP00000131203.1, ENSDART00000169022.2
    Conserved Domains (1) summary
    pfam01101
    Location:272
    HMG14_17; HMG14 and HMG17

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    51181043..51184126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)