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si:dkey-12h9.6 si:dkey-12h9.6 [ Danio rerio (zebrafish) ]

Gene ID: 569780, updated on 4-Jan-2025

Summary

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Official Symbol
si:dkey-12h9.6provided by ZNC
Official Full Name
si:dkey-12h9.6provided by ZNC
Primary source
ZFIN:ZDB-GENE-041001-145
See related
Ensembl:ENSDARG00000056092 AllianceGenome:ZFIN:ZDB-GENE-041001-145
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within neuronal signal transduction. Predicted to be located in nucleus and rough endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:dkey-12h9.6 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (26026712..26041994, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (26127622..26143311, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene calpain 3b Neighboring gene uncharacterized LOC110438179 Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene nuclear receptor binding protein 1 Neighboring gene general transcription factor IIH, polypeptide 5 Neighboring gene serine active site containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within neuronal signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in rough endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
macoilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    26026712..26041994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005160603.5 → XP_005160660.1  macoilin isoform X2

    UniProtKB/TrEMBL
    A0A8M2B7G7, F1QSG2
    Related
    ENSDARP00000122413.2, ENSDART00000140255.3
    Conserved Domains (1) summary
    pfam09726
    Location:2 → 632
    Macoilin; Transmembrane protein

  2. XM_005160602.5 → XP_005160659.1  macoilin isoform X1

    UniProtKB/TrEMBL
    A0A8M2B7G9
    Conserved Domains (1) summary
    pfam09726
    Location:2 → 636
    Macoilin; Transmembrane protein

  3. XM_009302955.4 → XP_009301230.1  macoilin isoform X3

    UniProtKB/TrEMBL
    A0A8M3B3V8
    Related
    ENSDARP00000145556.1, ENSDART00000179929.1
    Conserved Domains (1) summary
    pfam09726
    Location:1 → 603
    Macoilin; Transmembrane protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395074.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    142093..157375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473365.2 → XP_021329040.1  macoilin isoform X2

    UniProtKB/TrEMBL
    A0A8M2B7G7, F1QSG2
    Conserved Domains (1) summary
    pfam09726
    Location:2 → 632
    Macoilin; Transmembrane protein

  2. XM_021473364.2 → XP_021329039.1  macoilin isoform X1

    UniProtKB/TrEMBL
    A0A8M2B7G9
    Conserved Domains (1) summary
    pfam09726
    Location:2 → 636
    Macoilin; Transmembrane protein

  3. XM_021473366.2 → XP_021329041.1  macoilin isoform X3

    UniProtKB/TrEMBL
    A0A8M3B3V8
    Conserved Domains (1) summary
    pfam09726
    Location:1 → 603
    Macoilin; Transmembrane protein
Nucleotide Protein
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