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perm1a PPARGC1 and ESRR induced regulator, muscle 1a [ Danio rerio (zebrafish) ]

Gene ID: 569303, updated on 3-Dec-2024

Summary

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Official Symbol
perm1aprovided by ZNC
Official Full Name
PPARGC1 and ESRR induced regulator, muscle 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-358
See related
AllianceGenome:ZFIN:ZDB-GENE-090313-358
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-98j1.5
Orthologs
human mouse all
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Genomic context

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See perm1a in Genome Data Viewer
Location:
chromosome: 23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (23254333..23258849, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (23327778..23334210, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 17 Neighboring gene pleckstrin homology domain containing, family N member 1 Neighboring gene uncharacterized LOC137489184 Neighboring gene uncharacterized LOC137489124 Neighboring gene hairy-related 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
PGC-1 and ERR-induced regulator in muscle protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    23254333..23258849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021469961.2 → XP_021325636.2  PGC-1 and ERR-induced regulator in muscle protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PTI2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395148.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    179562..185759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692681.7 → XP_697773.4  PGC-1 and ERR-induced regulator in muscle protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PTI2, A0A8N7UVA7
Nucleotide Protein
Heading Accession and Version

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