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si:ch211-107m4.1 si:ch211-107m4.1 [ Danio rerio (zebrafish) ]

Gene ID: 569278, updated on 9-Dec-2024

Summary

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Official Symbol
si:ch211-107m4.1provided by ZNC
Official Full Name
si:ch211-107m4.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-081107-3
See related
Ensembl:ENSDARG00000056830 AllianceGenome:ZFIN:ZDB-GENE-081107-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human HNRNPUL2 (heterogeneous nuclear ribonucleoprotein U like 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:ch211-107m4.1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (22480351..22495630, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (22183934..22198513, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene growth differentiation factor 9 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 22 Neighboring gene SMYD family member 5 Neighboring gene uncharacterized LOC137487584

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein U-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    22480351..22495630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692655.10 → XP_697747.4  heterogeneous nuclear ribonucleoprotein U-like protein 2

    UniProtKB/TrEMBL
    A0A8N7TEL1, E9QBM3
    Related
    ENSDARP00000119095.2, ENSDART00000137167.4
    Conserved Domains (3) summary
    pfam02037
    Location:6 → 40
    SAP; SAP domain
    pfam13671
    Location:454 → 593
    AAA_33; AAA domain
    cd12884
    Location:242 → 414
    SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1
Nucleotide Protein
Heading Accession and Version

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