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atrnl1b attractin-like 1b [ Danio rerio (zebrafish) ]

Gene ID: 569196, updated on 4-Jan-2025

Summary

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Official Symbol
atrnl1bprovided by ZNC
Official Full Name
attractin-like 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8092
See related
Ensembl:ENSDARG00000006420 AllianceGenome:ZFIN:ZDB-GENE-030131-8092
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
atrnl1; fj51h04; wu:fj51h04
Summary
Predicted to enable Notch binding activity. Predicted to be located in membrane. Orthologous to human ATRNL1 (attractin like 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See atrnl1b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (29842966..30032165, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (29728090..29917261, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene neuregulin 3b Neighboring gene uncharacterized LOC137496862 Neighboring gene gdnf family receptor alpha 1b Neighboring gene actin binding LIM protein 1b Neighboring gene TruB pseudouridine (psi) synthase family member 1 Neighboring gene uncharacterized LOC108191726

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. tdrd1 is a germline-specific and sexually dimorphically expressed gene in Paralichthys olivaceus. Zhao J, et al. Gene, 2018 Oct 5. PMID 29920365
  2. Gdnf Acts as a Germ Cell-Derived Growth Factor and Regulates the Zebrafish Germ Stem Cell Niche in Autocrine- and Paracrine-Dependent Manners. Doretto LB, et al. Cells, 2022 Apr 11. PMID 35455974, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables Notch binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
attractin-like protein 1
Names
attractin-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    29842966..30032165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692563.10 → XP_697655.4  attractin-like protein 1

    UniProtKB/TrEMBL
    A0A8N7UTF5, E7F6C7
    Related
    ENSDARP00000042513.7, ENSDART00000042514.10
    Conserved Domains (9) summary
    cd03597
    Location:730 → 858
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:74 → 189
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:997 → 1042
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:449 → 498
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:873 → 922
    PSI; Plexin repeat
    pfam13415
    Location:298 → 344
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:449 → 495
    Kelch_4; Galactose oxidase, central domain
    pfam13854
    Location:333 → 373
    Kelch_5; Kelch motif
    cl19567
    Location:211 → 261
    DSL; Delta serrate ligand
Nucleotide Protein Strain
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